Detailed information of SNP:
|
SNP ID:
sf0205295864(Gbrowse)
Chromosome: chr02 Position: 5295864 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.61% | 47.39% |
| All Indica | 798 | 29.45% | 70.55% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 49.60% | 50.40% |
| Indica II | 212 | 11.32% | 88.68% |
| Indica Intermediate | 211 | 11.85% | 88.15% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205295864 | T->C | INTERGENIC | None |