Detailed information of SNP:
|
SNP ID:
sf0205296506(Gbrowse)
Chromosome: chr02 Position: 5296506 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 52.22% | 47.78% |
| All Indica | 798 | 28.95% | 71.05% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 48.93% | 51.07% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 211 | 12.32% | 87.68% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205296506 | C->T | INTERGENIC | None |