Detailed information of SNP:
|
SNP ID:
sf0205299577(Gbrowse)
Chromosome: chr02 Position: 5299577 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 52.26% | 47.74% |
| All Indica | 796 | 28.77% | 71.23% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 48.93% | 51.07% |
| Indica II | 212 | 10.85% | 89.15% |
| Indica Intermediate | 210 | 10.95% | 89.05% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205299577 | G->A | LOC_Os02g10130(LOC_Os02g10130.1) | INTRON |