Detailed information of SNP:
|
SNP ID:
sf0205303001(Gbrowse)
Chromosome: chr02 Position: 5303001 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 51.98% | 48.02% |
| All Indica | 798 | 28.45% | 71.55% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 48.53% | 51.47% |
| Indica II | 213 | 10.80% | 89.20% |
| Indica Intermediate | 210 | 10.48% | 89.52% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205303001 | T->C | LOC_Os02g10130(LOC_Os02g10130.1) | INTRON |