Detailed information of SNP:
|
SNP ID:
sf0205305321(Gbrowse)
Chromosome: chr02 Position: 5305321 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 52.22% | 47.78% |
| All Indica | 797 | 28.73% | 71.27% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 48.93% | 51.07% |
| Indica II | 212 | 10.85% | 89.15% |
| Indica Intermediate | 211 | 10.90% | 89.10% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205305321 | A->C | LOC_Os02g10130(LOC_Os02g10130.1) | INTRON |