Detailed information of SNP:
|
SNP ID:
sf0205314015(Gbrowse)
Chromosome: chr02 Position: 5314015 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 60.17% | 39.83% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205314015 | T->G | INTERGENIC | None |