Detailed information of SNP:
|
SNP ID:
sf0205319578(Gbrowse)
Chromosome: chr02 Position: 5319578 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.59% | 43.41% |
| All Indica | 799 | 87.23% | 12.77% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205319578 | C->T | INTERGENIC | None |