Detailed information of SNP:
|
SNP ID:
sf0205331756(Gbrowse)
Chromosome: chr02 Position: 5331756 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.93% | 42.07% |
| All Indica | 799 | 27.28% | 72.72% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 20.27% | 79.73% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 211 | 16.59% | 83.41% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205331756 | G->T | INTERGENIC | None |