Detailed information of SNP:
|
SNP ID:
sf0205358849(Gbrowse)
Chromosome: chr02 Position: 5358849 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 85.91% | 14.09% |
| All Indica | 799 | 85.86% | 14.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205358849 | G->T | LOC_Os02g10230(LOC_Os02g10230.1) | Synonymous |