Detailed information of SNP:
|
SNP ID:
sf0205435877(Gbrowse)
Chromosome: chr02 Position: 5435877 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 63.55% | 36.45% |
| All Indica | 797 | 97.87% | 2.13% |
| All Japonica | 493 | 2.43% | 97.57% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 91 | 6.59% | 93.41% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205435877 | A->G | LOC_Os02g10340(LOC_Os02g10340.1) | Synonymous |