Detailed information of SNP:
|
SNP ID:
sf0205436718(Gbrowse)
Chromosome: chr02 Position: 5436718 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1228 | 61.89% | 38.11% |
| All Indica | 612 | 27.12% | 72.88% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 278 | 17.99% | 82.01% |
| Indica II | 176 | 43.18% | 56.82% |
| Indica Intermediate | 158 | 25.32% | 74.68% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205436718 | C->T | LOC_Os02g10340(LOC_Os02g10340.1) | Non-Synonymous SNP |