Detailed information of SNP:
|
SNP ID:
sf0205491231(Gbrowse)
Chromosome: chr02 Position: 5491231 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 87.03% | 12.97% |
| All Indica | 798 | 90.85% | 9.15% |
| All Japonica | 491 | 95.93% | 4.07% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 332 | 97.59% | 2.41% |
| Tropical Japonica | 92 | 89.13% | 10.87% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205491231 | C->T | LOC_Os02g10450(LOC_Os02g10450.1) | Non-Synonymous SNP |