Detailed information of SNP:



SNP ID: sf0205500892(Gbrowse)

Chromosome: chr02

Position: 5500892
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 98.17% 1.83%
All Indica799 99.87% 0.13%
All Japonica497 94.97% 5.03%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 73.40% 26.60%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0205500892 C->T INTERGENIC None