Detailed information of SNP:
|
SNP ID:
sf0205521492(Gbrowse)
Chromosome: chr02 Position: 5521492 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 53.85% | 46.15% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205521492 | A->G | INTERGENIC | None |