Detailed information of SNP:
|
SNP ID:
sf0205541527(Gbrowse)
Chromosome: chr02 Position: 5541527 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 53.14% | 46.86% |
| All Indica | 798 | 88.72% | 11.28% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205541527 | C->T | INTERGENIC | None |