Detailed information of SNP:
|
SNP ID:
sf0205554214(Gbrowse)
Chromosome: chr02 Position: 5554214 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.04% | 49.96% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205554214 | G->A | INTERGENIC | None |