Detailed information of SNP:
|
SNP ID:
sf0205559811(Gbrowse)
Chromosome: chr02 Position: 5559811 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 54.59% | 45.41% |
| All Indica | 797 | 91.22% | 8.78% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205559811 | A->T | INTERGENIC | None |