Detailed information of SNP:
|
SNP ID:
sf0205562421(Gbrowse)
Chromosome: chr02 Position: 5562421 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 53.65% | 46.35% |
| All Indica | 792 | 89.77% | 10.23% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 207 | 71.50% | 28.50% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205562421 | A->C | LOC_Os02g10570(LOC_Os02g10570.1) | INTRON |