Detailed information of SNP:
|
SNP ID:
sf0205623004(Gbrowse)
Chromosome: chr02 Position: 5623004 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.81% | 49.19% |
| All Indica | 799 | 17.40% | 82.60% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 2.67% | 97.33% |
| Indica II | 213 | 47.89% | 52.11% |
| Indica Intermediate | 211 | 12.80% | 87.20% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205623004 | A->T | INTERGENIC | None |