Detailed information of SNP:
|
SNP ID:
sf0205631770(Gbrowse)
Chromosome: chr02 Position: 5631770 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1237 | 93.61% | 6.39% |
| All Indica | 620 | 91.29% | 8.71% |
| All Japonica | 496 | 96.17% | 3.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 272 | 88.97% | 11.03% |
| Indica II | 176 | 89.77% | 10.23% |
| Indica Intermediate | 172 | 96.51% | 3.49% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205631770 | A->T | INTERGENIC | None |