Detailed information of SNP:
|
SNP ID:
sf0205633844(Gbrowse)
Chromosome: chr02 Position: 5633844 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 89.62% | 10.38% |
| All Indica | 796 | 85.30% | 14.70% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 373 | 79.36% | 20.64% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205633844 | G->A | INTERGENIC | None |