Detailed information of SNP:
|
SNP ID:
sf0205646080(Gbrowse)
Chromosome: chr02 Position: 5646080 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 52.93% | 47.07% |
| All Indica | 797 | 28.36% | 71.64% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 375 | 28.80% | 71.20% |
| Indica II | 211 | 29.86% | 70.14% |
| Indica Intermediate | 211 | 26.07% | 73.93% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205646080 | C->T | INTERGENIC | None |