Detailed information of SNP:
|
SNP ID:
sf0205647907(Gbrowse)
Chromosome: chr02 Position: 5647907 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.12% | 42.88% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205647907 | T->C | INTERGENIC | None |