Detailed information of SNP:
|
SNP ID:
sf0205660004(Gbrowse)
Chromosome: chr02 Position: 5660004 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 93.00% | 7.00% |
| All Indica | 795 | 89.69% | 10.31% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 86.10% | 13.90% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205660004 | T->A | INTERGENIC | None |