Detailed information of SNP:
|
SNP ID:
sf0205684729(Gbrowse)
Chromosome: chr02 Position: 5684729 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1262 | 98.73% | 1.27% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 345 | 95.65% | 4.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 220 | 98.64% | 1.36% |
| Tropical Japonica | 75 | 88.00% | 12.00% |
| Japonica Intermediate | 50 | 94.00% | 6.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205684729 | T->A | INTERGENIC | None |