Detailed information of SNP:
|
SNP ID:
sf0205733501(Gbrowse)
Chromosome: chr02 Position: 5733501 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 73.59% | 26.41% |
| All Indica | 796 | 69.72% | 30.28% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 71.12% | 28.88% |
| Indica II | 212 | 81.13% | 18.87% |
| Indica Intermediate | 210 | 55.71% | 44.29% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205733501 | A->T | INTERGENIC | None |