Detailed information of SNP:
|
SNP ID:
sf0205737044(Gbrowse)
Chromosome: chr02 Position: 5737044 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.66% | 43.34% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205737044 | C->A | LOC_Os02g10800(LOC_Os02g10800.1) | Synonymous |
| sf0205737044 | C->A | LOC_Os02g10800(LOC_Os02g10800.3) | Synonymous |
| sf0205737044 | C->A | LOC_Os02g10800(LOC_Os02g10800.2) | Synonymous |