Detailed information of SNP:
|
SNP ID:
sf0205737867(Gbrowse)
Chromosome: chr02 Position: 5737867 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 87.53% | 12.47% |
| All Indica | 799 | 89.49% | 10.51% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205737867 | C->G | LOC_Os02g10800(LOC_Os02g10800.1) | INTRON |
| sf0205737867 | C->G | LOC_Os02g10800(LOC_Os02g10800.3) | INTRON |
| sf0205737867 | C->G | LOC_Os02g10800(LOC_Os02g10800.2) | INTRON |