Detailed information of SNP:
|
SNP ID:
sf0205749844(Gbrowse)
Chromosome: chr02 Position: 5749844 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.25% | 49.75% |
| All Indica | 799 | 86.36% | 13.64% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205749844 | G->A | INTERGENIC | None |