Detailed information of SNP:
|
SNP ID:
sf0205768155(Gbrowse)
Chromosome: chr02 Position: 5768155 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.75% | 47.25% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205768155 | C->T | INTERGENIC | None |