Detailed information of SNP:
|
SNP ID:
sf0205797280(Gbrowse)
Chromosome: chr02 Position: 5797280 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 53.25% | 46.75% |
| All Indica | 795 | 91.82% | 8.18% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205797280 | C->T | INTERGENIC | None |