Detailed information of SNP:
|
SNP ID:
sf0205800449(Gbrowse)
Chromosome: chr02 Position: 5800449 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 98.85% | 1.15% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 472 | 96.82% | 3.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 99.68% | 0.32% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 63 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205800449 | A->G | LOC_Os02g10920(LOC_Os02g10920.5) | Non-Synonymous SNP |
| sf0205800449 | A->G | LOC_Os02g10920(LOC_Os02g10920.4) | Non-Synonymous SNP |
| sf0205800449 | A->G | LOC_Os02g10920(LOC_Os02g10920.3) | Non-Synonymous SNP |
| sf0205800449 | A->G | LOC_Os02g10920(LOC_Os02g10920.1) | Non-Synonymous SNP |
| sf0205800449 | A->G | LOC_Os02g10920(LOC_Os02g10920.2) | Non-Synonymous SNP |
| sf0205800449 | A->G | LOC_Os02g10920(LOC_Os02g10920.6) | Non-Synonymous SNP |