Detailed information of SNP:
|
SNP ID:
sf0205801196(Gbrowse)
Chromosome: chr02 Position: 5801196 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 53.25% | 46.75% |
| All Indica | 795 | 92.08% | 7.92% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205801196 | T->C | LOC_Os02g10920(LOC_Os02g10920.5) | INTRON |
| sf0205801196 | T->C | LOC_Os02g10920(LOC_Os02g10920.4) | INTRON |
| sf0205801196 | T->C | LOC_Os02g10920(LOC_Os02g10920.6) | INTRON |