Detailed information of SNP:



SNP ID: sf0205808842(Gbrowse)

Chromosome: chr02

Position: 5808842
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 98.38% 1.62%
All Indica799 97.12% 2.88%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 99.20% 0.80%
Indica II213 96.24% 3.76%
Indica Intermediate211 94.31% 5.69%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0205808842 G->A INTERGENIC None