Detailed information of SNP:
|
SNP ID:
sf0205823956(Gbrowse)
Chromosome: chr02 Position: 5823956 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.57% | 47.43% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205823956 | C->T | INTERGENIC | None |