Detailed information of SNP:
|
SNP ID:
sf0205851172(Gbrowse)
Chromosome: chr02 Position: 5851172 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 98.58% | 1.42% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 423 | 95.74% | 4.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 282 | 99.29% | 0.71% |
| Tropical Japonica | 80 | 91.25% | 8.75% |
| Japonica Intermediate | 61 | 85.25% | 14.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205851172 | C->A | INTERGENIC | None |