Detailed information of SNP:
|
SNP ID:
sf0205856474(Gbrowse)
Chromosome: chr02 Position: 5856474 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 88.94% | 11.06% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205856474 | T->C | INTERGENIC | None |