Detailed information of SNP:



SNP ID: sf0205924397(Gbrowse)

Chromosome: chr02

Position: 5924397
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1379 98.48% 1.52%
All Indica799 99.87% 0.13%
All Japonica458 95.63% 4.37%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica301 99.00% 1.00%
Tropical Japonica93 88.17% 11.83%
Japonica Intermediate64 90.62% 9.38%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0205924397 C->T INTERGENIC None