Detailed information of SNP:
|
SNP ID:
sf0205930978(Gbrowse)
Chromosome: chr02 Position: 5930978 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 63.90% | 36.10% |
| All Indica | 796 | 41.58% | 58.42% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 9 | 11.11% | 88.89% |
| Indica I | 375 | 36.27% | 63.73% |
| Indica II | 212 | 41.04% | 58.96% |
| Indica Intermediate | 209 | 51.67% | 48.33% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 1 | 100.00% | 0.00% |
| Intermediate | 34 | 88.24% | 11.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205930978 | G->A | LOC_Os02g11070(LOC_Os02g11070.1) | INTRON |
| sf0205930978 | G->A | LOC_Os02g11070(LOC_Os02g11070.2) | INTRON |