Detailed information of SNP:
|
SNP ID:
sf0205949239(Gbrowse)
Chromosome: chr02 Position: 5949239 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1193 | 71.42% | 28.58% |
| All Indica | 580 | 57.41% | 42.59% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 64 | 0.00% | 100.00% |
| Indica I | 275 | 49.09% | 50.91% |
| Indica II | 148 | 59.46% | 40.54% |
| Indica Intermediate | 157 | 70.06% | 29.94% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205949239 | G->A | INTERGENIC | None |