Detailed information of SNP:
|
SNP ID:
sf0205950133(Gbrowse)
Chromosome: chr02 Position: 5950133 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 89.84% | 10.16% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205950133 | C->A | INTERGENIC | None |