Detailed information of SNP:
|
SNP ID:
sf0205952749(Gbrowse)
Chromosome: chr02 Position: 5952749 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 51.95% | 48.05% |
| All Indica | 794 | 78.46% | 21.54% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 372 | 65.05% | 34.95% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205952749 | A->G | INTERGENIC | None |