Detailed information of SNP:
|
SNP ID:
sf0205955682(Gbrowse)
Chromosome: chr02 Position: 5955682 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.59% | 48.41% |
| All Indica | 799 | 88.11% | 11.89% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205955682 | A->T | LOC_Os02g11110(LOC_Os02g11110.2) | UTR_3_PRIME |
| sf0205955682 | A->T | LOC_Os02g11110(LOC_Os02g11110.1) | INTRON |