Detailed information of SNP:
|
SNP ID:
sf0205989836(Gbrowse)
Chromosome: chr02 Position: 5989836 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 95.19% | 4.81% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 494 | 88.87% | 11.13% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 44.57% | 55.43% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0205989836 | G->A | LOC_Os02g11660(LOC_Os02g11660.1) | Synonymous |