Detailed information of SNP:
|
SNP ID:
sf0206023772(Gbrowse)
Chromosome: chr02 Position: 6023772 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1312 | 95.43% | 4.57% |
| All Indica | 777 | 99.74% | 0.26% |
| All Japonica | 418 | 98.80% | 1.20% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 367 | 100.00% | 0.00% |
| Indica II | 206 | 99.51% | 0.49% |
| Indica Intermediate | 204 | 99.51% | 0.49% |
| Temperate Japonica | 287 | 98.95% | 1.05% |
| Tropical Japonica | 72 | 97.22% | 2.78% |
| Japonica Intermediate | 59 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206023772 | C->T | INTERGENIC | None |