Detailed information of SNP:
|
SNP ID:
sf0206054174(Gbrowse)
Chromosome: chr02 Position: 6054174 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 66.38% | 33.62% |
| All Indica | 793 | 45.02% | 54.98% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 371 | 40.97% | 59.03% |
| Indica II | 212 | 47.64% | 52.36% |
| Indica Intermediate | 210 | 49.52% | 50.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206054174 | C->A | INTERGENIC | None |