Detailed information of SNP:
|
SNP ID:
sf0206092855(Gbrowse)
Chromosome: chr02 Position: 6092855 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 85.78% | 14.22% |
| All Indica | 780 | 75.13% | 24.87% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 362 | 63.54% | 36.46% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 207 | 78.26% | 21.74% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206092855 | G->A | INTERGENIC | None |