Detailed information of SNP:
|
SNP ID:
sf0206099857(Gbrowse)
Chromosome: chr02 Position: 6099857 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 59.63% | 40.37% |
| All Indica | 793 | 91.80% | 8.20% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 89.52% | 10.48% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206099857 | C->T | INTERGENIC | None |