Detailed information of SNP:
|
SNP ID:
sf0206101249(Gbrowse)
Chromosome: chr02 Position: 6101249 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 58.24% | 41.76% |
| All Indica | 793 | 87.64% | 12.36% |
| All Japonica | 492 | 3.66% | 96.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 86.29% | 13.71% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 208 | 83.65% | 16.35% |
| Temperate Japonica | 330 | 3.94% | 96.06% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206101249 | A->G | INTERGENIC | None |