Detailed information of SNP:
|
SNP ID:
sf0206101296(Gbrowse)
Chromosome: chr02 Position: 6101296 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 58.16% | 41.84% |
| All Indica | 791 | 87.23% | 12.77% |
| All Japonica | 496 | 4.64% | 95.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 85.68% | 14.32% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 334 | 5.69% | 94.31% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0206101296 | A->G | INTERGENIC | None |